When I did mine I drained the system at the radiator drain plug and cap, removed a heater matrix hose, flushed with deionised water through the hose till it ran clear.
I then replaced the radiator drain plug and cap, filled with a funnel through the heater matrix hose, this filled the head and radiator then kept filling until the coolant constantly ran through the heater matrix and out at the bulkhead.
I then reconnected the heater matrix hose and topped off the coolant reservoir, the reservoir dropped slightly after around 3 runs, then was topped off and is now settled.
All done on a cold engine, I used to do it hot on my old car so the thermostat was open and the head cleared but would occasionally get an airlock in the heater matrix after filling which needed bleeding.